CDS

Accession Number TCMCG046C37598
gbkey CDS
Protein Id XP_008777371.1
Location complement(join(44529..44846,45092..45178,46283..46483,46599..46803,50951..51795))
Gene LOC103697308
GeneID 103697308
Organism Phoenix dactylifera

Protein

Length 551aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249070
db_source XM_008779149.3
Definition ribonuclease III domain-containing protein RNC1, chloroplastic [Phoenix dactylifera]

EGGNOG-MAPPER Annotation

COG_category A
Description Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on both subgroup IIA and subgroup IIB introns. The substrates of the subgroup II also require the CRM domain proteins CAF1 or CAF2. Binds both single-stranded and double-stranded RNA non-specifically, but lacks endonuclease activity. Required for plastid ribosome biogenesis
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000373        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003725        [VIEW IN EMBL-EBI]
GO:0003727        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004519        [VIEW IN EMBL-EBI]
GO:0004521        [VIEW IN EMBL-EBI]
GO:0004525        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016246        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016891        [VIEW IN EMBL-EBI]
GO:0016893        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0030422        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0031053        [VIEW IN EMBL-EBI]
GO:0031054        [VIEW IN EMBL-EBI]
GO:0032296        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0035195        [VIEW IN EMBL-EBI]
GO:0035196        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090502        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGTCTTTCAAGCCCTAATCCGCCCATCTCTCCCCAGCGACCCCAAATCCCTCTTATTCTCCTCACCTATGGAGGTCTCTTCTCCTCTCAAATCCGACCTCTCCTTCTCTTCCTCCCTCTCCCCTTTCCCTCTCCAAACCCGCCTCAAGTCCCCCAAATCCTTCCGCTCCTTCTTCACCAACACCTCCGTCTTCGCCGTCGCCGTCAACCCCGACCAAGAGGCGCCGGCCAACAGCCCCCATAGGCTCCTCAAAGAGCTCGCCGAGCGTAAAAAAGTGGCCTTTCCGAAGAAAAGGACCCCCCCGAGGACGTTCATACTGAAACCCCCGCTAGATGATGCTAAATTGACCGAGAGATTCCTCAACAGCCCCCAGTTGTCCCTAAAGTCGTTTCCTTTGTTGAGTTCTTGCTTGCCGTTCTCCCGTTTGAACAATGCCGACAAGACGTGGATGGAAGAGTACCTTCTCGAGGCAAAGCAGGCGCTCGGATATCCCCTGGAGCCATCTGACCGGTTCGATGATGATAACCCGGCGAAGCAGTTTGACACCCTGCTGTACTTGGCGTTTCAGCATCCGTCGTGTGATAGGACCAATGCAAGGCATGTCCGGAATGGGCACTCAAGGCTCTGGTTCTTGGGACAGTATGTGCTCGAGCTGGCATTTGCTGAATACTTCTTGCAGAAGTACCCGAGGGAGTCGCCGGCGCCGATGAGGGAGAGGGTTTATGCGCTGATTGGGAAGAGGAATTTACCAAAGTGGATCAAAGCTGCGAGCTTGCAGAATTTGGTGTTTCCATTTGATGAGATGGATAAACTGATCCGGAACGAGAGAGAGCCACCAGTGAAATCTGTATTCTGGGCACTGTTTGGAGCAATATATCTGTGTTTTGGTATGCCTGAAGTTTACCGTGTTCTATTTGAAGCATTTGGAATGGATCCAGAAGGTGAGAGCTGTCAACCAAAATTGAGACGGCAACTGGAAGATGTCGATTATGTTTCCGTTGAGTTCGAAGGCCGCCAGCTTAGCTGGCAAGATGTTGCTGCCTATAAGCCCCCGCAAGATGCACTTTTTGCACATCCAAGGCTTTTTAGAGCATGCGTTCCTCCAGGTATGCATCGTTTTCGAGGGAATATCTGGGACTTTGACAGCAGACCCCAAGTCATGCAAATACTAGGATACCCTTTGCCAATGAATGACAGAATTCCAGAAATCACAGAAGCAAGGAACATTGAACTTGGACTTGGGCTTCAGTTGTGCTTTATGCATCCCTCCAAGTACAAATTTGAGCATCCGCGATTTTGTCTGGAGCGGTTGGAATATGTTGGCCAAAAGATTCAGGATCTTGTTGTGGCTGAGAGATTACTCATGAAGCATCTTGATGCACCTGGAAGATGGTTACAAGAGAAGCATCGCCGATTATTAATGAACAAGTACTGTGGACGGTACCTGAGGGACAAGCACCTTCATCGCTTCATCATATATGGTGAGTCAGTCCAAGACAAGTTTGAGCATAATCGTAGGCTCAGGAATCCGGCCACAACTGCAGTCCAACAAGCAATACATGGGCTTGCGTACACAGTCTATGGCAAACCAGATGTCAGGCGATTGATGTTCGAAGTGTTTGATGTTGAGCAGATCCAACCCAAGGCTGTTTGA
Protein:  
MVFQALIRPSLPSDPKSLLFSSPMEVSSPLKSDLSFSSSLSPFPLQTRLKSPKSFRSFFTNTSVFAVAVNPDQEAPANSPHRLLKELAERKKVAFPKKRTPPRTFILKPPLDDAKLTERFLNSPQLSLKSFPLLSSCLPFSRLNNADKTWMEEYLLEAKQALGYPLEPSDRFDDDNPAKQFDTLLYLAFQHPSCDRTNARHVRNGHSRLWFLGQYVLELAFAEYFLQKYPRESPAPMRERVYALIGKRNLPKWIKAASLQNLVFPFDEMDKLIRNEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEAFGMDPEGESCQPKLRRQLEDVDYVSVEFEGRQLSWQDVAAYKPPQDALFAHPRLFRACVPPGMHRFRGNIWDFDSRPQVMQILGYPLPMNDRIPEITEARNIELGLGLQLCFMHPSKYKFEHPRFCLERLEYVGQKIQDLVVAERLLMKHLDAPGRWLQEKHRRLLMNKYCGRYLRDKHLHRFIIYGESVQDKFEHNRRLRNPATTAVQQAIHGLAYTVYGKPDVRRLMFEVFDVEQIQPKAV